Last updated on 2023-01-29 11:56:55 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| animint2 | 1 | 12 | ||
| atime | 13 | |||
| aum | 13 | |||
| binsegRcpp | 13 | |||
| directlabels | 13 | |||
| inlinedocs | 1 | 12 | ||
| LOPART | 13 | |||
| namedCapture | 12 | 1 | ||
| nc | 12 | 1 | ||
| PeakError | 13 | |||
| PeakSegDisk | 3 | 10 | ||
| PeakSegDP | 13 | |||
| PeakSegJoint | 1 | 4 | 8 | |
| PeakSegOptimal | 3 | 10 | ||
| penaltyLearning | 5 | 8 | ||
| plotHMM | 13 | |||
| WeightedROC | 13 |
Current CRAN status: WARN: 1, OK: 12
Version: 2022.9.14
Check: for unstated dependencies in ‘tests’
Result: WARN
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/bioc/src/contrib:
cannot open URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/annotation/src/contrib:
cannot open URL 'https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.14/data/experiment/src/contrib:
cannot open URL 'https://bioconductor.org/packages/3.14/data/experiment/src/contrib/PACKAGES'
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 2019.12.5
Check: Rd cross-references
Result: NOTE
Undeclared package ‘R.methodsS3’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: NOTE: 12, OK: 1
Version: 2020.4.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘re2r’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 12, OK: 1
Version: 2020.8.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘re2r’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 2022.2.1
Check: C++ specification
Result: NOTE
Specified C++11: please update to current default of C++17
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, WARN: 4, OK: 8
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 15.0.6’
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-12 (Debian 12.2.0-14) 12.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-clang/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘clang version 15.0.6’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2022.4.6
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
See ‘/data/gannet/ripley/R/packages/tests-devel/PeakSegJoint.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2022.4.6
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'PeakSegJoint-Ex.R' failed
The error most likely occurred in:
> ### Name: PeakSegJointError
> ### Title: PeakSegJointError
> ### Aliases: PeakSegJointError
>
> ### ** Examples
>
>
> library(PeakSegJoint)
> data(H3K36me3.TDH.other.chunk1, envir=environment())
> lims <- c(43000000, 43200000) # left
> some.counts <-
+ subset(H3K36me3.TDH.other.chunk1$counts,
+ lims[1] < chromEnd & chromStart < lims[2])
> some.regions <-
+ subset(H3K36me3.TDH.other.chunk1$regions,
+ lims[1] < chromEnd & chromStart < lims[2])
> fit <- PeakSegJointSeveral(some.counts)
Flavor: r-oldrel-windows-ix86+x86_64
Version: 2022.4.6
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> suite <- Sys.getenv("TEST_SUITE")
> if(suite=="")suite <- NULL
> test_check("PeakSegJoint", filter=suite)
Loading required package: PeakSegJoint
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 2018.05.25
Check: C++ specification
Result: NOTE
Specified C++11: please update to current default of C++17
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 2020.5.13
Check: C++ specification
Result: NOTE
Specified C++11: please update to current default of C++17
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2020.5.13
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘jointseg’
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 13