ACDC: Analysis of Congruent Diversification Classes

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.

Version: 1.0.0
Depends: R (≥ 3.5.0), ggplot2
Imports: magrittr, deSolve, dplyr, tibble, colorspace, patchwork, latex2exp, tidyr
Suggests: knitr, rmarkdown, ape
Published: 2022-01-12
Author: Bjørn Tore Kopperud [aut, cre], Sebastian Höhna [aut], Andrew F. Magee [aut]
Maintainer: Bjørn Tore Kopperud <kopperud at protonmail.com>
License: GPL-3
URL: https://github.com/afmagee/ACDC
NeedsCompilation: no
Materials: README NEWS
CRAN checks: ACDC results

Documentation:

Reference manual: ACDC.pdf

Downloads:

Package source: ACDC_1.0.0.tar.gz
Windows binaries: r-devel: ACDC_1.0.0.zip, r-release: ACDC_1.0.0.zip, r-oldrel: ACDC_1.0.0.zip
macOS binaries: r-release (arm64): ACDC_1.0.0.tgz, r-release (x86_64): ACDC_1.0.0.tgz, r-oldrel: not available

Linking:

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