AmyloGram: Prediction of Amyloid Proteins

Predicts amyloid proteins using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.

Version: 1.0
Depends: R (≥ 3.0.0)
Imports: biogram, ranger, seqinr, shiny
Suggests: DT, ggplot2, knitr, markdown, rmarkdown
Published: 2016-09-24
Author: Michal Burdukiewicz [cre, aut], Piotr Sobczyk [ctb], Stefan Roediger [ctb]
Maintainer: Michal Burdukiewicz <michalburdukiewicz at gmail.com>
BugReports: https://github.com/michbur/AmyloGram/issues
License: GPL-3
URL: https://github.com/michbur/AmyloGram
NeedsCompilation: no
Citation: AmyloGram citation info
Materials: README
CRAN checks: AmyloGram results

Downloads:

Reference manual: AmyloGram.pdf
Package source: AmyloGram_1.0.tar.gz
Windows binaries: r-devel: AmyloGram_1.0.zip, r-release: AmyloGram_1.0.zip, r-oldrel: AmyloGram_1.0.zip
OS X El Capitan binaries: r-release: AmyloGram_1.0.tgz
OS X Mavericks binaries: r-oldrel: AmyloGram_1.0.tgz

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