BCellMA: B Cell Receptor Somatic Hyper Mutation Analysis

Includes a set of functions to analyze for instance nucleotide frequencies as well as transition and transversion. Can reconstruct germline sequences based on the international ImMunoGeneTics information system (IMGT/HighV-QUEST) outputs, calculate and plot the difference (%) of nucleotides at 6 positions around a mutation to identify and characterize hotspot motifs as well as calculate and plot average mutation frequencies of nucleotide mutations resulting in amino acid substitution.

Version: 0.3.4
Depends: R (≥ 3.2.5), ggplot2, reshape2, grid
Suggests: graphics, utils, knitr, rmarkdown
Published: 2017-03-08
Author: Olena Ohlei
Maintainer: Olena Ohlei <olena.ohlei at student.uni-luebeck.de>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://www.r-project.org
NeedsCompilation: no
CRAN checks: BCellMA results

Downloads:

Reference manual: BCellMA.pdf
Vignettes: Vignette Title
Package source: BCellMA_0.3.4.tar.gz
Windows binaries: r-devel: BCellMA_0.3.4.zip, r-release: BCellMA_0.3.4.zip, r-oldrel: BCellMA_0.3.4.zip
OS X El Capitan binaries: r-release: BCellMA_0.3.4.tgz
OS X Mavericks binaries: r-oldrel: BCellMA_0.3.4.tgz
Old sources: BCellMA archive

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