In the functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option print is removed.
In the function bdgraph.sim() option type="dw" is added.
In the function bdgraph.sim() option type="discrete" is changed to type="count".
Bug fixed for gnorm() function.
README is added to the package.
bf() is added to the package.adj2link() is added to the package.link2adj() is added to the package.bdgraph.ts() is removed.precision() is added to the package.covariance() is added to the package.compare() function.get_graph() is added to the package and used inside function compare().get_g_prior(), get_g_start(), get_S_n_p(), get_K_start(), and get_cores() are added to the package and used inside function bdgraph().compare() option est4 is added.In the functions rgwish(), rgcwish() and gnorm(), option adj.g is changed to adj.
In the function compare(), option sim.obj is changed to target.
In the function compare(), option bdgraph.obj is changed to est.
In the function compare(), option bdgraph.obj2 is changed to est2.
In the function compare(), option bdgraph.obj3 is changed to est3.
In the function plotroc(), option sim.obj is changed to target.
In the function plotroc(), option bdgraph.obj is changed to est.
In the function plotroc(), option bdgraph.obj2 is changed to est2.
In the function plotroc(), option bdgraph.obj3 is changed to est3.
In the function plotroc(), option bdgraph.obj4 is changed to est4.
Bug fixed for bdgraph() function with option method = gcgm.
Functions summary.bdgraph, plot.bdgraph, and print.bdgraph are modified.
Files configure and configure.ac are removed and files Makevars and Makevars.win are modified accordingly.
In the functions bdgraph(), bdgraph.mpl(), and bdgraph.ts() option save.all is changed to save.
In the functions bdgraph() and bdgraph.mpl(), option multi.update is changed to jump.
In the functions bdgraph() and bdgraph.ts(), option prior.df is changed to df.prior.
In the function pgraph(), option adj_g is changed to adj.
Option threshold is added to the function rgwish().
Option threshold is added to the function bdgraph().
Option not.cont is added to the function bdgraph().
In the function compare(), option colnames is changed to main.
In functions bdgraph() and bdgraph.mpl(), option g.space is removed. Instead user can use option g.prior.
Bug fixed for bdgraph.ts() function.
Data set churn is added.
rgwish() and rcgwish().graph.sim is added to the package.plot.graph is added to the package.rmvnorm is added to the package.bdgraph.ts, rcwish, and rcgwish are added to the package.local_rates_ggm_mpl in cpp is added for bdgraph.mpl function.configure and configure.ac are added to the package for Makevars file.bdgraph.ts, rcwish, and rcgwish are removed from the package.dgm-binary is added to function bdgraph() which is for running Hill-Climbing algorihtm for binary data.configure and configure.ac are added to configure checks of C++ codes.bdgraph.mpl() is added to the package, which is based on Marginal Pseudo-Likelihood estimation.gcgm, step copula are implimented in parallel using OpenMP in C++.bdgraph.ts is implimented in parallel using OpenMP in C++.g.prior is added to function bdgraph(), for prior distribution of the graph.cores is added to function bdgraph(), for determining the number of cores to use for parallel execution.transfer() is added to the package.bdgraph.ts(), rgcwish(), and rcwish() are added to the package.phat() is changed to plinks().prob() is changed to pgraph().log_Ig() is changed to gnorm().I.g() is chenged to log_Ig() and it is implemented in C++.bdgraph() fonction.I.g is added.