CINmetrics: Calculate Chromosomal Instability Metrics

Implement various chromosomal instability metrics. 'CINmetrics' (Chromosomal INstability metrics) provides functions to calculate various chromosomal instability metrics on masked Copy Number Variation(CNV) data at individual sample level. The chromosomal instability metrics have been implemented as described in the following studies: Baumbusch LO et al. 2013 <doi:10.1371/journal.pone.0054356>, Davidson JM et al. 2014 <doi:10.1371/journal.pone.0079079>, Chin SF et al. 2007 <doi:10.1186/gb-2007-8-10-r215>.

Version: 0.1.0
Depends: R (≥ 2.10), stats
Suggests: knitr, rmarkdown
Published: 2021-08-02
Author: Vishal H. Oza, Roshan Darji, Brittany N. Lasseigne
Maintainer: Vishal H. Oza <vishoza at uab.edu>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: CINmetrics results

Downloads:

Reference manual: CINmetrics.pdf
Vignettes: CINmetrics
Package source: CINmetrics_0.1.0.tar.gz
Windows binaries: r-devel: CINmetrics_0.1.0.zip, r-release: CINmetrics_0.1.0.zip, r-oldrel: CINmetrics_0.1.0.zip
macOS binaries: r-release (arm64): CINmetrics_0.1.0.tgz, r-release (x86_64): CINmetrics_0.1.0.tgz, r-oldrel: CINmetrics_0.1.0.tgz

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