CONDOP: Condition-Dependent Operon Predictions

An implementation of the computational strategy for the comprehensive analysis of condition-dependent operon maps in prokaryotes proposed by Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq transcriptome profiles to improve prokaryotic operon map inference.

Version: 1.0
Depends: R (≥ 3.0.1)
Imports: stats, utils, mclust, earth, plyr, seqinr, randomForest, rminer, GenomicRanges, GenomeInfoDb, S4Vectors, IRanges
Published: 2016-02-24
Author: Vittorio Fortino
Maintainer: Vittorio Fortino <vittorio.fortino at ttl.fi>
License: GPL-3
NeedsCompilation: no
CRAN checks: CONDOP results

Downloads:

Reference manual: CONDOP.pdf
Package source: CONDOP_1.0.tar.gz
Windows binaries: r-devel: CONDOP_1.0.zip, r-release: CONDOP_1.0.zip, r-oldrel: CONDOP_1.0.zip
OS X Mavericks binaries: r-release: CONDOP_1.0.tgz, r-oldrel: CONDOP_1.0.tgz

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