DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See e.g. Valente et al. 2015. Ecology Letters 18: 844-852, <doi:10.1111/ele.12461>.

Version: 3.0.1
Depends: R (≥ 3.5.0)
Imports: deSolve, graphics, stats, utils, DDD (≥ 4.4), subplex, Matrix, tensor, pracma, testit, foreach, doParallel, magrittr, parallel
Suggests: covr, testthat (≥ 2.1.0), knitr, rmarkdown, gridExtra, dplyr, ggplot2, ggtree, tidytree, tidyr, purrr, ape, phytools, tibble
Enhances: doMC
Published: 2020-08-26
Author: Rampal S. Etienne ORCID iD [aut, cre], Luis Valente ORCID iD [aut], Albert B. Phillimore ORCID iD [aut], Bart Haegeman ORCID iD [aut], Joshua W. Lambert [aut], Pedro Neves ORCID iD [aut], Shu Xie [aut], Richèl J.C. Bilderbeek ORCID iD [aut], Torsten Hauffe ORCID iD [ctb], Giovanni Laudanno [ctb], Nadiah Kristensen [ctb], Raphael Scherrer [ctb]
Maintainer: Rampal S. Etienne <r.s.etienne at rug.nl>
License: GPL-3
NeedsCompilation: yes
CRAN checks: DAISIE results

Downloads:

Reference manual: DAISIE.pdf
Vignettes: Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE
Demo optimizing parameters
Demo simulating islands
Package source: DAISIE_3.0.1.tar.gz
Windows binaries: r-devel: DAISIE_3.0.1.zip, r-release: DAISIE_3.0.1.zip, r-oldrel: DAISIE_3.0.1.zip
macOS binaries: r-release: DAISIE_3.0.1.tgz, r-oldrel: DAISIE_3.0.1.tgz
Old sources: DAISIE archive

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