EHR: Electronic Health Record (EHR) Data Processing and Analysis Tool

Process and analyze Electronic Health Record (EHR) data. The 'EHR' package provides modules to perform diverse medication-related studies using data from EHR databases. Especially, the package includes modules to perform pharmacokinetic/pharmacodynamic (PK/PD) analyses using EHRs, as outlined in Choi, Beck, McNeer, Weeks, Williams, James, Niu, Abou-Khalil, Birdwell, Roden, Stein, Bejan, Denny, and Van Driest (2020) <doi:10.1002/cpt.1787>. Additional modules will be added in future. In addition, this package provides various functions useful to perform Phenome Wide Association Study (PheWAS) to explore associations between drug exposure and phenotypes obtained from EHR data, as outlined in Choi, Carroll, Beck, Mosley, Roden, Denny, and Van Driest (2018) <doi:10.1093/bioinformatics/bty306>.

Version: 0.3-1
Depends: R (≥ 2.10)
Imports: stats, utils, data.table, methods
Suggests: glmnet, logistf, medExtractR, knitr, rmarkdown, ggplot2, formula.tools
Published: 2020-10-08
Author: Leena Choi ORCID iD [aut, cre], Cole Beck ORCID iD [aut], Hannah Weeks [aut], Elizabeth McNeer [aut]
Maintainer: Leena Choi <naturechoi at gmail.com>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: EHR results

Downloads:

Reference manual: EHR.pdf
Vignettes: 2. Dose Building Using Example Vanderbilt EHR Data
1. EHR Vignette for Extract-Med and Pro-Med-NLP
Package source: EHR_0.3-1.tar.gz
Windows binaries: r-devel: EHR_0.3-1.zip, r-release: EHR_0.3-1.zip, r-oldrel: EHR_0.3-1.zip
macOS binaries: r-release: EHR_0.3-1.tgz, r-oldrel: EHR_0.3-1.tgz
Old sources: EHR archive

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