EnrichIntersect: Enrichment Analysis and Intersecting Sankey Diagram

A flexible tool for enrichment analysis based on user-defined sets is provided. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al. (2022) <doi:10.1016/j.isci.2022.104767>) or similar methods.

Version: 0.1
Depends: R (≥ 4.0)
Imports: ggplot2, dplyr, networkD3, jsonlite, htmlwidgets, webshot2, grDevices, methods
Published: 2022-07-21
Author: Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb]
Maintainer: Zhi Zhao <zhi.zhao at medisin.uio.no>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: NEWS
CRAN checks: EnrichIntersect results

Documentation:

Reference manual: EnrichIntersect.pdf

Downloads:

Package source: EnrichIntersect_0.1.tar.gz
Windows binaries: r-devel: EnrichIntersect_0.1.zip, r-release: EnrichIntersect_0.1.zip, r-oldrel: EnrichIntersect_0.1.zip
macOS binaries: r-release (arm64): EnrichIntersect_0.1.tgz, r-oldrel (arm64): EnrichIntersect_0.1.tgz, r-release (x86_64): EnrichIntersect_0.1.tgz, r-oldrel (x86_64): EnrichIntersect_0.1.tgz

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