EpiNow2 1.1.0

• Implemented reporting templates
• Bug fix of estimate reporting
• Added additional reporting of runtime errors
• Examples for global_map and country_map expanded by @ellisp
• Improved ISO code matching in global_map from @ellisp
• Improvements so that data frames and tibbles are supported as inputs.
• Updated reporting templates
• Updated reporting of estimates to clearly summarise cases by infection and report date.
• Made all region summary plots optional.
• Made reporting of decimal places more standardised across metrics.
• README updated by @kathsherratt
• Logging added by @joeHickson
• Updated plotting to be limited to a scaling of reported data (prevents upper CIs from skewing the plot).
• Added uncertainty plot bounds to control y axis on plots for clarity purposes.
• regional_summary now saves input reported cases data reported_cases.csv.
• Added an optional no delay model where Rt is estimated directly from the data. This option is not supported when using backcalculation only.

EpiNow2 1.0.0

• Rebased package from EpiNow
• Implemented backcalculation, estimation, forecasting, and bootstrapped distribution fitting.
• Added options to estimate the time-varying reproduction number using a Gaussian process (both stationary and non-stationary), combined with optional user supplied breakpoints. Alternatively a static reproduction number can be assumed which when combined with breakpoints becomes piecewise linear.