FLightR: A Package for Reconstructing Animal Paths from Solar Geolocation Loggers

Spatio-temporal locations of an animal are computed from annotated data with a hidden Markov model via particle filter algorithm. The package is relatively robust to varying degrees of shading. The hidden Markov model is described in Movement Ecology (Rakhimberdiev et al., 2015)<doi:10.1186/s40462-015-0062-5>, general package description is in the Methods in Ecology and Evolution (Rakhimberdiev et al., 2017)<doi:10.1111/2041-210X.12765> and package accuracy assessed in the Journal of Avian Biology (Rakhimberdiev et al. 2016)<doi:10.1111/jav.00891>.

Version: 0.4.7
Depends: R (≥ 3.0.2)
Imports: bit, ggsn, ggmap, ggplot2, CircStats, circular, GeoLight, fields, maptools, methods, mgcv, nlme, parallel, raster, RcppArmadillo, rgdal, rgeos, sp, truncnorm
Suggests: covr, testthat, knitr, rmarkdown
Published: 2018-10-11
Author: Eldar Rakhimberdiev [aut, cre], Anatoly Saveliev [aut], Julia Karagicheva [aut], Simeon Lisovski [ctb]
Maintainer: Eldar Rakhimberdiev <eldar at nioz.nl>
BugReports: http://github.com/eldarrak/FLightR/issues
License: GPL-3
URL: https://CRAN.R-project.org/package=FLightR
NeedsCompilation: no
Citation: FLightR citation info
Materials: README
In views: SpatioTemporal
CRAN checks: FLightR results

Downloads:

Reference manual: FLightR.pdf
Vignettes: FLightR with black-tailed godwit vignette from MEE 2017
Package source: FLightR_0.4.7.tar.gz
Windows binaries: r-devel: FLightR_0.4.7.zip, r-release: FLightR_0.4.7.zip, r-oldrel: FLightR_0.4.7.zip
OS X binaries: r-release: FLightR_0.4.7.tgz, r-oldrel: FLightR_0.4.7.tgz
Old sources: FLightR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=FLightR to link to this page.