Fluidigm: Handling Fluidigm Data

Designed to streamline the process of analyzing genotyping data from Fluidigm machines, this package offers a suite of tools for data handling and analysis. It includes functions for converting Fluidigm data to format used by 'PLINK', estimating errors, calculating pairwise similarities, determining pairwise similarity loci, and generating a similarity matrix.

Version: 0.2
Imports: data.table (≥ 1.9.4), graphics, grDevices, reshape (≥ 0.8.8), stats, utils
Suggests: knitr, rmarkdown, testthat, digest
Published: 2024-03-12
Author: Daniel Fischer ORCID iD [aut, cre], Helena Johansson [ctb, fnd], Robert Ekblom ORCID iD [aut]
Maintainer: Daniel Fischer <Daniel.Fischer at luke.fi>
License: GPL-3
NeedsCompilation: no
SystemRequirements: perl (>= 5.10.0), plink (>=1.07)
Materials: README ChangeLog
CRAN checks: Fluidigm results

Documentation:

Reference manual: Fluidigm.pdf
Vignettes: Vignette

Downloads:

Package source: Fluidigm_0.2.tar.gz
Windows binaries: r-prerel: Fluidigm_0.2.zip, r-release: Fluidigm_0.2.zip, r-oldrel: Fluidigm_0.2.zip
macOS binaries: r-prerel (arm64): Fluidigm_0.2.tgz, r-release (arm64): Fluidigm_0.2.tgz, r-oldrel (arm64): Fluidigm_0.2.tgz, r-prerel (x86_64): Fluidigm_0.2.tgz, r-release (x86_64): Fluidigm_0.2.tgz

Linking:

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