HTSSIP

HTSSIP is an R package for analyzing high throughput sequence data from nucleotide stable isotope probing (DNA- & RNA-SIP) experiments.

Available analyzes

• Identifying community-level isotope incorporatation
• Ordinations of gradient fraction communities

• Beta diversity of overlapping gradient fractions

• Identifying isotope incorporators
• High resolution stable isotope probing (HR-SIP)
• Multiple window high resolution stable isotope probing (MW-HR-SIP)

• Quantitative stable isotope probing (q-SIP)

Documentation

All documentation can be found on CRAN.

A good place to start is the HTSSIP introduction vignette.

Reference

See References in the HTSSIP introduction vignette.

Installation

To get the current released version from CRAN:

install.packages("HTSSIP") 

To get the current development version from github:

# install.packages("devtools")
devtools::install_github("nick-youngblut/HTSSIP")