IMAGE: Integrated Methylation QTL Mapping and Allele-Specific Analysis

Performs mQTL (methylation quantitative-trait locus) mapping in bisulfite sequencing studies by fitting a binomial mixed model and then incorporating the allelic-specific methylation pattern. Based on Fan, Yue; Vilgalys, Tauras P.; Sun, Shiquan; Peng, Qinke; Tung, Jenny; Zhou, Xiang (2019) <doi:10.1101/615039>.

Version: 1.0
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 0.12.19), foreach, doParallel, parallel, Matrix
LinkingTo: Rcpp, RcppArmadillo
Published: 2019-07-28
Author: Xiang Zhou [aut], Shiquan Sun [aut], Yue Fan [aut], Michael Kleinsasser [cre]
Maintainer: Michael Kleinsasser <mkleinsa at umich.edu>
BugReports: https://github.com/umich-biostatistics/IMAGE/issues
License: GPL-2
NeedsCompilation: yes
Materials: README
CRAN checks: IMAGE results

Downloads:

Reference manual: IMAGE.pdf
Package source: IMAGE_1.0.tar.gz
Windows binaries: r-devel: IMAGE_1.0.zip, r-release: IMAGE_1.0.zip, r-oldrel: IMAGE_1.0.zip
OS X binaries: r-release: IMAGE_1.0.tgz, r-oldrel: IMAGE_1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=IMAGE to link to this page.