MultIS: Reconstruction of Clones from Integration Site Readouts and Visualization

Tools necessary to reconstruct clonal affiliations from temporally and/or spatially separated measurements of viral integration sites. For this means it utilizes correlations present in the relative readouts of the integration sites. Furthermore, facilities for filtering of the data and visualization of different steps in the pipeline are provided with the package.

Version: 0.5.1
Imports: clValid, cluster, clv, dplyr, foreach, ggplot2, igraph, ltm, plyr, poweRlaw, reshape2, RColorBrewer, rlang, rmutil
Suggests: knitr, markdown, mclust, testthat, gridExtra
Published: 2021-05-26
Author: Sebastian Wagner ORCID iD [cre, aut], Christoph Baldow ORCID iD [aut], Ingmar Glauche ORCID iD [ths]
Maintainer: Sebastian Wagner <sebastian.wagner3 at tu-dresden.de>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL]
NeedsCompilation: no
CRAN checks: MultIS results

Downloads:

Reference manual: MultIS.pdf
Vignettes: MultIS QuickStart
Package source: MultIS_0.5.1.tar.gz
Windows binaries: r-devel: MultIS_0.5.1.zip, r-release: MultIS_0.5.1.zip, r-oldrel: MultIS_0.5.1.zip
macOS binaries: r-release (arm64): MultIS_0.5.1.tgz, r-release (x86_64): MultIS_0.5.1.tgz, r-oldrel: MultIS_0.5.1.tgz

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