OncoSubtype: Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.

Version: 1.0.0
Depends: SummarizedExperiment, R (≥ 3.63)
Imports: caret, randomForest, methods, e1071, pheatmap, tibble, dplyr, limma, rlang, Rdpack
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-03-22
Author: Dadong Zhang
Maintainer: Dadong Zhang <dadong.zhang.shared at gmail.com>
BugReports: https://github.com/DadongZ/OncoSubtype/issues
License: GPL-3
URL: https://github.com/DadongZ/OncoSubtype
NeedsCompilation: no
Materials: README
CRAN checks: OncoSubtype results

Documentation:

Reference manual: OncoSubtype.pdf
Vignettes: OncoSubtype

Downloads:

Package source: OncoSubtype_1.0.0.tar.gz
Windows binaries: r-prerel: OncoSubtype_1.0.0.zip, r-release: OncoSubtype_1.0.0.zip, r-oldrel: OncoSubtype_1.0.0.zip
macOS binaries: r-prerel (arm64): OncoSubtype_1.0.0.tgz, r-release (arm64): OncoSubtype_1.0.0.tgz, r-oldrel (arm64): OncoSubtype_1.0.0.tgz, r-prerel (x86_64): OncoSubtype_1.0.0.tgz, r-release (x86_64): OncoSubtype_1.0.0.tgz

Linking:

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