PAC: Partition-Assisted Clustering and Multiple Alignments of Networks

Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.

Version: 1.0.7
Imports: Rcpp (≥ 0.12.2), igraph, parmigene, infotheo, dplyr
LinkingTo: Rcpp
Suggests: knitr, NMF
Published: 2017-03-10
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <ywli at stanford.edu>
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: PAC results

Downloads:

Reference manual: PAC.pdf
Vignettes: Using the PAC package
Package source: PAC_1.0.7.tar.gz
Windows binaries: r-devel: PAC_1.0.7.zip, r-release: PAC_1.0.7.zip, r-oldrel: PAC_1.0.7.zip
OS X Mavericks binaries: r-release: PAC_1.0.7.tgz, r-oldrel: PAC_1.0.7.tgz
Old sources: PAC archive

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