PACVr: Plastome Assembly Coverage Visualization

Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.

Version: 1.0.11
Depends: R (≥ 3.3.0)
Imports: Biostrings (≥ 2.48.0), dplyr, GenomicAlignments (≥ 1.18.1), GenomicRanges, IRanges, logger, read.gb (≥ 2.2), RCircos (≥ 1.2.0), grDevices, stats, utils, tidyr, R6
Suggests: testthat (≥ 3.0.0), rentrez
Published: 2024-04-10
Author: Gregory Smith [ctb], Nils Jenke [ctb], Michael Gruenstaeudl ORCID iD [aut, cre]
Maintainer: Michael Gruenstaeudl <m_gruenstaeudl at fhsu.edu>
BugReports: https://github.com/michaelgruenstaeudl/PACVr/issues
License: BSD 3-clause License + file LICENSE
URL: https://github.com/michaelgruenstaeudl/PACVr
NeedsCompilation: no
Citation: PACVr citation info
CRAN checks: PACVr results

Documentation:

Reference manual: PACVr.pdf
Vignettes: PACVr

Downloads:

Package source: PACVr_1.0.11.tar.gz
Windows binaries: r-devel: PACVr_1.0.11.zip, r-release: PACVr_1.0.11.zip, r-oldrel: PACVr_1.0.8.zip
macOS binaries: r-release (arm64): PACVr_1.0.11.tgz, r-oldrel (arm64): PACVr_1.0.11.tgz, r-release (x86_64): PACVr_1.0.11.tgz
Old sources: PACVr archive

Linking:

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