PTXQC: Quality Report Generation for MaxQuant Results

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (see <>). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.

Version: 0.82.5
Depends: R (≥ 3.0.0)
Imports: data.table, ggplot2, ggdendro, graphics, grid, gridExtra, grDevices, gtable, methods, plyr, proto, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils, yaml
Suggests: knitr (≥ 1.10), testthat
Published: 2017-05-04
Author: Chris Bielow
Maintainer: Chris Bielow <chris.bielow at>
License: GPL-2
NeedsCompilation: no
SystemRequirements: pandoc ( for building Vignettes and output reports as HTML
Citation: PTXQC citation info
Materials: README NEWS
CRAN checks: PTXQC results


Reference manual: PTXQC.pdf
Vignettes: Basic R-Usage Guide for PTXQC
Customizing PTXQC reports
Drag'n'drop Usage Guide for PTXQC
Frequently asked questions for PTXQC
Input/Output data for PTXQC
Package source: PTXQC_0.82.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: PTXQC_0.82.5.tgz
OS X Mavericks binaries: r-oldrel: PTXQC_0.82.5.tgz
Old sources: PTXQC archive


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