RScelestial: Scelestial: Steiner Tree Based Single-Cell Lineage Tree Inference

Scelestial infers a lineage tree from single-cell DNA mutation matrix. It generates a tree with approximately maximum parsimony through a Steiner tree approximation algorithm.

Version: 1.0.0
Imports: Rcpp (≥ 1.0.1)
LinkingTo: Rcpp
Suggests: igraph, knitr
Published: 2019-11-28
Author: Mohammad Hadi Foroughmand Araabi [aut, cre], Sama Goliaei [aut, ctb], Alice McHardy [ctb]
Maintainer: Mohammad Hadi Foroughmand Araabi <foroughmand at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: RScelestial results

Downloads:

Reference manual: RScelestial.pdf
Vignettes: RScelestial Vignette
Package source: RScelestial_1.0.0.tar.gz
Windows binaries: r-devel: RScelestial_1.0.0.zip, r-devel-gcc8: RScelestial_1.0.0.zip, r-release: RScelestial_1.0.0.zip, r-oldrel: RScelestial_1.0.0.zip
OS X binaries: r-release: RScelestial_1.0.0.tgz, r-oldrel: RScelestial_1.0.0.tgz

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