RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors.

Version: 0.99.0
Depends: R (≥ 3.6), GenomicRanges, GenomeInfoDb
Imports: methods, e1071, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils
Suggests: knitr, rmarkdown, markdown, Gviz, rtracklayer
Published: 2021-04-27
Author: Rafael Campos-Martin ORCID iD [cre], Sophia Schmickler [aut], Manish Goel [ctb], Korbinian Schneeberger [aut], Achim Tresch [aut]
Maintainer: Rafael Campos-Martin <rfael.mpi at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: RTIGER results


Reference manual: RTIGER.pdf
Vignettes: RTIGER_Markdown
Package source: RTIGER_0.99.0.tar.gz
Windows binaries: r-devel: RTIGER_0.99.0.zip, r-release: RTIGER_0.99.0.zip, r-oldrel: RTIGER_0.99.0.zip
macOS binaries: r-release (arm64): not available, r-release (x86_64): RTIGER_0.99.0.tgz, r-oldrel: RTIGER_0.99.0.tgz


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