Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
| Version: | 1.1.2 |
| Depends: | R (≥ 3.5.0), MSEtool (≥ 3.0.0) |
| Imports: | TMB, corpcor, dplyr, gplots, graphics, methods, rmarkdown, snowfall, stats, utils |
| LinkingTo: | TMB, RcppEigen |
| Suggests: | caret, covr, ggplot2, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat |
| Published: | 2021-03-09 |
| Author: | Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut] |
| Maintainer: | Quang Huynh <quang at bluematterscience.com> |
| BugReports: | https://github.com/Blue-Matter/SAMtool/issues |
| License: | GPL-3 |
| URL: | https://github.com/Blue-Matter/SAMtool |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | SAMtool results |
| Reference manual: | SAMtool.pdf |
| Vignettes: |
1a. Delay-difference and delay-differential models 2. Description of the RCM (Rapid Conditioning Model) for conditioning MSEtool operating models 2a. Mathematical description of the RCM 2b. Configuring selectivity for the RCM 1. User guide to SAMtool and model-based MPs 1b. Statistical catch-at-age (SCA) model 1c. Surplus production model 1d. Virtual population analysis (VPA) |
| Package source: | SAMtool_1.1.2.tar.gz |
| Windows binaries: | r-devel: SAMtool_1.1.2.zip, r-devel-UCRT: SAMtool_1.1.2.zip, r-release: SAMtool_1.1.2.zip, r-oldrel: SAMtool_1.1.2.zip |
| macOS binaries: | r-release: SAMtool_1.1.2.tgz, r-oldrel: SAMtool_1.1.2.tgz |
| Old sources: | SAMtool archive |
| Reverse depends: | openMSE |
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