SNPknock: Knockoffs for Hidden Markov Models and Genetic Data

Generates knockoff variables from discrete Markov chains and hidden Markov models, with specific support for genetic data. For more information, see the website below and the accompanying paper: Sesia et al., "Gene Hunting with Knockoffs for Hidden Markov Models", 2017, <arXiv:1706.04677>.

Version: 0.7.1
Depends: R (≥ 3.3.0)
Imports: Rcpp (≥ 0.12.13)
LinkingTo: Rcpp, RcppProgress
Suggests: knitr, testthat, parallel, doParallel
Published: 2018-05-30
Author: Matteo Sesia
Maintainer: Matteo Sesia <msesia at stanford.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://web.stanford.edu/group/candes/knockoffs/software/snpknock/
NeedsCompilation: yes
Materials: NEWS
CRAN checks: SNPknock results

Downloads:

Reference manual: SNPknock.pdf
Vignettes: Using SNPknock in R
Using SNPknock with Genetic Data
Package source: SNPknock_0.7.1.tar.gz
Windows binaries: r-devel: SNPknock_0.7.1.zip, r-release: SNPknock_0.7.1.zip, r-oldrel: SNPknock_0.7.1.zip
OS X binaries: r-release: SNPknock_0.7.1.tgz, r-oldrel: SNPknock_0.7.1.tgz
Old sources: SNPknock archive

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