SNPknock: Knockoffs for Hidden Markov Models and Genomic Data

Generates knockoff variables from discrete Markov chains and hidden Markov models, with specific support for genomic data. For more information, see the website below and the accompanying paper: Sesia et al., "Gene Hunting with Knockoffs for Hidden Markov Models", 2017, <arXiv:1706.04677>.

Version: 0.5
Depends: R (≥ 3.3.0)
Imports: Rcpp (≥ 0.12.13)
LinkingTo: Rcpp
Suggests: knitr, testthat
Published: 2017-10-10
Author: Matteo Sesia
Maintainer: Matteo Sesia <msesia at stanford.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://statweb.stanford.edu/~candes/papers/HMM_Knockoffs.pdf
NeedsCompilation: yes
CRAN checks: SNPknock results

Downloads:

Reference manual: SNPknock.pdf
Vignettes: Using SNPknock in R
Package source: SNPknock_0.5.tar.gz
Windows binaries: r-devel: SNPknock_0.5.zip, r-release: SNPknock_0.5.zip, r-oldrel: SNPknock_0.5.zip
OS X El Capitan binaries: r-release: SNPknock_0.5.tgz
OS X Mavericks binaries: r-oldrel: SNPknock_0.5.tgz

Linking:

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