SubVis: Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

Version: 2.0.2
Depends: R (≥ 3.3.0), shiny, Biostrings
Suggests: knitr, rmarkdown
Published: 2017-05-23
Author: Scott Barlowe
Maintainer: Scott Barlowe <sabarlowe at email.wcu.edu>
License: GPL-3
NeedsCompilation: no
CRAN checks: SubVis results

Downloads:

Reference manual: SubVis.pdf
Vignettes: SubVis
Package source: SubVis_2.0.2.tar.gz
Windows binaries: r-devel: SubVis_2.0.2.zip, r-release: SubVis_2.0.2.zip, r-oldrel: SubVis_2.0.2.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: SubVis_2.0.2.tgz
Old sources: SubVis archive

Linking:

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