TDA: Statistical Tools for Topological Data Analysis

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <http://gudhi.gforge.inria.fr/>, 'Dionysus' <http://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.

Version: 1.6.4
Depends: R (≥ 3.1.0)
Imports: FNN, Rcpp (≥ 0.11.0), igraph, parallel, scales
LinkingTo: BH (≥ 1.60.0-2), Rcpp, RcppEigen
Suggests: testthat, lintr
Published: 2018-08-06
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, David L. Millman, Vincent Rouvreau. The included GUDHI is authored by Clement Maria, Dionysus by Dmitriy Morozov, and PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus.
Maintainer: Jisu Kim <jisuk1 at andrew.cmu.edu>
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11, gmp
Materials: README NEWS
CRAN checks: TDA results

Downloads:

Reference manual: TDA.pdf
Vignettes: Introduction to TDA
Package source: TDA_1.6.4.tar.gz
Windows binaries: r-devel: TDA_1.6.4.zip, r-release: TDA_1.6.4.zip, r-oldrel: TDA_1.6.4.zip
OS X binaries: r-release: TDA_1.6.4.tgz, r-oldrel: TDA_1.6.4.tgz
Old sources: TDA archive

Reverse dependencies:

Reverse imports: pterrace
Reverse suggests: archiDART

Linking:

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