TDCor: Gene Network Inference from Time-Series Transcriptomic Data

The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.

Version: 0.1-2
Depends: R (≥ 3.1.2), deSolve
Imports: parallel
Published: 2015-10-26
Author: Julien Lavenus
Maintainer: Mikael Lucas <mikael.lucas at ird.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: TDCor results

Downloads:

Reference manual: TDCor.pdf
Package source: TDCor_0.1-2.tar.gz
Windows binaries: r-devel: TDCor_0.1-2.zip, r-release: TDCor_0.1-2.zip, r-oldrel: TDCor_0.1-2.zip
OS X Mavericks binaries: r-release: TDCor_0.1-2.tgz, r-oldrel: TDCor_0.1-2.tgz
Old sources: TDCor archive

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