TPEA: A Novel Topology-Based Pathway Enrichment Analysis Approach

We described a novel Topology-based pathway enrichment analysis, which integrated the global position of the nodes and the topological property of the pathways in Kyoto Encyclopedia of Genes and Genomes Database. We also provide some functions to obtain the latest information about pathways to finish pathway enrichment analysis using this method.

Version: 3.0.1
Depends: R (≥ 2.10), MESS, Matrix, foreach
Imports: XML, RCurl, utils, igraph
Suggests: geeM, geepack
Published: 2017-06-14
Author: Wei Jiang
Maintainer: Wei Jiang <jiangwei at hrbmu.edu.cn>
License: GPL-2
NeedsCompilation: no
CRAN checks: TPEA results

Downloads:

Reference manual: TPEA.pdf
Package source: TPEA_3.0.1.tar.gz
Windows binaries: r-devel: TPEA_3.0.1.zip, r-release: TPEA_3.0.1.zip, r-oldrel: TPEA_3.0.1.zip
OS X El Capitan binaries: r-release: TPEA_3.0.1.tgz
OS X Mavericks binaries: r-oldrel: TPEA_3.0.1.tgz
Old sources: TPEA archive

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