apTreeshape: Analyses of Phylogenetic Treeshape

Simulation and analysis of phylogenetic tree topologies using statistical indices. It is a companion library of the 'ape' package. It provides additional functions for reading, plotting, manipulating phylogenetic trees. It also offers convenient web-access to public databases, and enables testing null models of macroevolution using corrected test statistics. Trees of class "phylo" (from 'ape' package) can be converted easily. Implements methods described in Bortolussi et al. (2005) <doi:10.1093/bioinformatics/bti798> and Maliet et al. (2017) <doi:10.1101/224295>.

Version: 1.5-0
Depends: R (≥ 2.0.0), ape
Imports: quantreg, cubature, coda, pbapply
Published: 2018-04-04
Author: Nicolas Bortolussi, Michael Blum, Eric Durand, Olivier Francois, Odile Maliet
Maintainer: Michael Blum <michael.blum at univ-grenoble-alpes.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
In views: Phylogenetics
CRAN checks: apTreeshape results

Downloads:

Reference manual: apTreeshape.pdf
Package source: apTreeshape_1.5-0.tar.gz
Windows binaries: r-devel: apTreeshape_1.5-0.zip, r-release: apTreeshape_1.5-0.zip, r-oldrel: apTreeshape_1.5-0.zip
OS X binaries: r-release: apTreeshape_1.5-0.tgz, r-oldrel: apTreeshape_1.5-0.tgz
Old sources: apTreeshape archive

Reverse dependencies:

Reverse depends: iteRates
Reverse imports: pez, secsse

Linking:

Please use the canonical form https://CRAN.R-project.org/package=apTreeshape to link to this page.