apex: Phylogenetic Methods for Multiple Gene Data

Toolkit for the analysis of multiple gene data (Jombart et al. 2017) <doi:10.1111/1755-0998.12567>. Apex implements the new S4 classes 'multidna', 'multiphyDat' and associated methods to handle aligned DNA sequences from multiple genes.

Version: 1.0.4
Depends: R (≥ 3.1.3), methods, ape, phangorn
Imports: utils, graphics, stats, adegenet
Suggests: testthat, knitr, rmarkdown
Published: 2020-04-11
Author: Klaus Schliep ORCID iD [aut, cre], Thibaut Jombart [aut], Zhian Namir Kamvar [aut], Eric Archer [aut], Rebecca Harris [aut]
Maintainer: Klaus Schliep <klaus.schliep at umb.edu>
BugReports: https://github.com/thibautjombart/apex/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/thibautjombart/apex
NeedsCompilation: no
Materials: README NEWS
In views: Phylogenetics
CRAN checks: apex results

Downloads:

Reference manual: apex.pdf
Vignettes: apex: Phylogenetic Methods for Multiple Gene Data.
Package source: apex_1.0.4.tar.gz
Windows binaries: r-devel: apex_1.0.4.zip, r-release: apex_1.0.4.zip, r-oldrel: apex_1.0.4.zip
macOS binaries: r-release (arm64): apex_1.0.4.tgz, r-release (x86_64): apex_1.0.4.tgz, r-oldrel: apex_1.0.4.tgz
Old sources: apex archive

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