biogram: N-Gram Analysis of Biological Sequences

Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Contains QuiPT (quick permutation test) for fast feature-filtering of the n-gram data.

Version: 1.4
Depends: R (≥ 3.0.0), slam
Imports: bit, combinat, entropy, partitions
Suggests: ggplot2, knitr, testthat
Published: 2017-01-06
Author: Michal Burdukiewicz [cre, aut], Piotr Sobczyk [aut], Chris Lauber [aut]
Maintainer: Michal Burdukiewicz <michalburdukiewicz at gmail.com>
BugReports: https://github.com/michbur/biogram/issues
License: GPL-3
URL: https://github.com/michbur/biogram
NeedsCompilation: no
Citation: biogram citation info
Materials: README ChangeLog
CRAN checks: biogram results

Downloads:

Reference manual: biogram.pdf
Vignettes: biogram package - an overview
Package source: biogram_1.4.tar.gz
Windows binaries: r-devel: biogram_1.4.zip, r-release: biogram_1.4.zip, r-oldrel: biogram_1.4.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: biogram_1.4.tgz
Old sources: biogram archive

Reverse dependencies:

Reverse imports: AmyloGram

Linking:

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