bioinactivation: Mathematical Modelling of (Dynamic) Microbial Inactivation

Functions for modelling microbial inactivation under isothermal or dynamic conditions. The calculations are based on several mathematical models broadly used by the scientific community and industry. Functions enable to make predictions for cases where the kinetic parameters are known. It also implements functions for parameter estimation for isothermal and dynamic conditions. The model fitting capabilities include an Adaptive Monte Carlo method for a Bayesian approach to parameter estimation.

Version: 1.2.3
Imports: dplyr (≥ 0.4.1), deSolve (≥ 1.11), FME (≥ 1.3.2), lazyeval (≥ 0.1.10), ggplot2 (≥ 2.0.0), MASS (≥ 7.3-39), graphics (≥ 3.1.3), stats (≥ 3.1.3), rlang (≥ 0.1.2), purrr (≥ 0.3.2)
Suggests: knitr (≥ 1.9), testthat (≥ 0.9.1), rmarkdown (≥ 1.12)
Published: 2019-08-01
DOI: 10.32614/CRAN.package.bioinactivation
Author: Alberto Garre [aut, cre], Pablo S. Fernandez [aut], Jose A. Egea [aut]
Maintainer: Alberto Garre <garre.alberto at>
License: GPL-3
NeedsCompilation: no
Citation: bioinactivation citation info
Materials: NEWS
CRAN checks: bioinactivation results


Reference manual: bioinactivation.pdf
Vignettes: bioinactivation: Software for modelling microbial inactivation


Package source: bioinactivation_1.2.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): bioinactivation_1.2.3.tgz, r-oldrel (arm64): bioinactivation_1.2.3.tgz, r-release (x86_64): bioinactivation_1.2.3.tgz, r-oldrel (x86_64): bioinactivation_1.2.3.tgz
Old sources: bioinactivation archive


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