castor: Efficient Phylogenetics on Large Trees

Efficient tree manipulations for large phylogenies, including pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters. Simulating and fitting models of trait evolution, and generating random trees using birth-death models. Dating trees, comparing two trees, and reading/writing trees to a file. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.

Version: 1.3.4
Depends: Rcpp (≥ 0.12.10)
Imports: parallel, naturalsort, stats
LinkingTo: Rcpp
Suggests: testthat
Published: 2018-08-16
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca at zoology.ubc.ca>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: castor citation info
CRAN checks: castor results

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Reference manual: castor.pdf
Package source: castor_1.3.4.tar.gz
Windows binaries: r-devel: castor_1.3.4.zip, r-release: castor_1.3.4.zip, r-oldrel: castor_1.3.4.zip
OS X binaries: r-release: castor_1.3.4.tgz, r-oldrel: castor_1.3.4.tgz
Old sources: castor archive

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