cinaR: A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data.

Version: 0.1.0
Depends: R (≥ 3.5.0)
Imports: ChIPseeker, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, ggplot2, ggrepel, grDevices, limma, utils, pheatmap, preprocessCore, RColorBrewer, sva, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, writexl
Suggests: biomaRt, knitr, rmarkdown
Published: 2020-11-14
Author: Onur Karakaslar [aut, cre], Duygu Ucar ORCID iD [aut]
Maintainer: Onur Karakaslar <eonurkara at gmail.com>
BugReports: https://github.com/eonurk/cinaR/issues/
License: GPL-3
URL: https://github.com/eonurk/cinaR/
NeedsCompilation: no
Materials: README
CRAN checks: cinaR results

Downloads:

Reference manual: cinaR.pdf
Vignettes: cinaR
Package source: cinaR_0.1.0.tar.gz
Windows binaries: r-devel: cinaR_0.1.0.zip, r-release: cinaR_0.1.0.zip, r-oldrel: cinaR_0.1.0.zip
macOS binaries: r-release: not available, r-oldrel: not available

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