corHMM: Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

Version: 2.8
Depends: ape, nloptr, GenSA
Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools
Suggests: testthat, knitr, rmarkdown
Published: 2022-06-13
DOI: 10.32614/CRAN.package.corHMM
Author: Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: corHMM results


Reference manual: corHMM.pdf
Vignettes: Generalized corHMM


Package source: corHMM_2.8.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): corHMM_2.8.tgz, r-oldrel (arm64): corHMM_2.8.tgz, r-release (x86_64): corHMM_2.8.tgz, r-oldrel (x86_64): corHMM_2.8.tgz
Old sources: corHMM archive

Reverse dependencies:

Reverse imports: hisse
Reverse suggests: DAISIEprep


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