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README

ctDNAtools

Travis build status Codecov test coverage DOI:10.1101/2020.01.27.912790 Lifecycle: stable

The ctDNAtools package provides functionalities to analyze circulating tumor DNA (ctDNA)/ cell-free DNA (cfDNA) sequencing data. The tools cover analysis of ctDNA/cfDNA fragmentation and analysis of cancer minimal residual disease.

Package overview

Installation

# From github

# install.packages("devtools")
devtools::install_github("alkodsi/ctDNAtools")

Getting started

Browse the vignette here

Citation

Alkodsi A, Meriranta L, Pasanen A, Leppä S (2020). “ctDNAtools: An R package to work with sequencing data of circulating tumor DNA.” bioRxiv.