cuperdec: Cumulative Percent Decay Curve Generator

Calculates and visualises cumulative percent 'decay' curves, which are typically calculated from metagenomic taxonomic profiles. These can be used to estimate the level of expected 'endogenous' taxa at different abundance levels retrieved from metagenomic samples, when comparing to samples of known sampling site or source. Method described in Fellows Yates, J. A. et. al. (2021) Proceedings of the National Academy of Sciences USA <doi:10.1073/pnas.2021655118>.

Version: 1.1.0
Depends: R (≥ 3.5.0)
Imports: dplyr, ggplot2, magrittr, readr, rlang, tidyr
Suggests: knitr, rmarkdown, testthat, tibble
Published: 2021-09-12
DOI: 10.32614/CRAN.package.cuperdec
Author: James A. Fellows Yates ORCID iD [aut, cre]
Maintainer: James A. Fellows Yates <jfy133 at>
License: MIT + file LICENSE
NeedsCompilation: no
Language: en-GB
Citation: cuperdec citation info
Materials: README NEWS
CRAN checks: cuperdec results


Reference manual: cuperdec.pdf
Vignettes: Introduction to cuperdec


Package source: cuperdec_1.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): cuperdec_1.1.0.tgz, r-oldrel (arm64): cuperdec_1.1.0.tgz, r-release (x86_64): cuperdec_1.1.0.tgz, r-oldrel (x86_64): cuperdec_1.1.0.tgz
Old sources: cuperdec archive


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