detectRUNS: Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes

Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et al (2015) <doi:10.1111/age.12259>).

Version: 0.9.5
Depends: R (≥ 3.0.0)
Imports: plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table
LinkingTo: Rcpp
Suggests: testthat, knitr, rmarkdown, prettydoc
Published: 2018-02-06
Author: Filippo Biscarini [aut, cre], Paolo Cozzi [aut], Giustino Gaspa [aut], Gabriele Marras [aut]
Maintainer: Filippo Biscarini <filippo.biscarini at gmail.com>
BugReports: https://github.com/bioinformatics-ptp/detectRUNS/issues
License: GPL-3
URL: https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: detectRUNS results

Downloads:

Reference manual: detectRUNS.pdf
Vignettes: detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes
Package source: detectRUNS_0.9.5.tar.gz
Windows binaries: r-prerel: detectRUNS_0.9.5.zip, r-release: detectRUNS_0.9.5.zip, r-oldrel: detectRUNS_0.9.5.zip
OS X binaries: r-prerel: detectRUNS_0.9.5.tgz, r-release: detectRUNS_0.9.5.tgz

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