filematrix: File-Backed Matrix Class with Convenient Read and Write Access

Interface for working with large matrices stored in files, not in computer memory. Supports multiple non-character data types (double, integer, logical and raw) of various sizes (e.g. 8 and 4 byte real values). Access to parts of the matrix is done by indexing, exactly as with usual R matrices. Supports very large matrices. Tested on multi-terabyte matrices. Allows for more than 2^32 rows or columns. Allows for quick addition of extra columns to a filematrix. Cross-platform as the package has R code only.

Version: 1.2
Depends: methods, utils
Suggests: BiocStyle, knitr, rmarkdown, RSQLite
Published: 2018-01-13
Author: Andrey A Shabalin ORCID iD [aut, cre]
Maintainer: Andrey A Shabalin <andrey.shabalin at gmail.com>
BugReports: https://github.com/andreyshabalin/filematrix/issues
License: LGPL-3
URL: https://github.com/andreyshabalin/filematrix
NeedsCompilation: no
CRAN checks: filematrix results

Downloads:

Reference manual: filematrix.pdf
Vignettes: 1 Filematrix overview
2 Best practices
3 Filematrix vs. bigmemory (packages)
Package source: filematrix_1.2.tar.gz
Windows binaries: r-devel: filematrix_1.2.zip, r-release: filematrix_1.2.zip, r-oldrel: filematrix_1.2.zip
OS X El Capitan binaries: r-release: filematrix_1.2.tgz
OS X Mavericks binaries: r-oldrel: filematrix_1.1.0.tgz
Old sources: filematrix archive

Reverse dependencies:

Reverse depends: ACMEeqtl

Linking:

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