geiger: Analysis of Evolutionary Diversification

Methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.

Version: 2.0.9
Depends: ape (≥ 3.0-6), R (≥ 2.15.0)
Imports: MASS, mvtnorm, subplex, deSolve (≥ 1.7), digest, Rcpp (≥ 0.11.0), coda, ncbit, colorspace, methods, phytools (≥ 0.7.31)
LinkingTo: Rcpp
Suggests: TreeSim
Published: 2022-05-12
Author: Luke Harmon, Matthew Pennell, Chad Brock, Joseph Brown, Wendell Challenger, Jon Eastman, Rich FitzJohn, Rich Glor, Gene Hunt, Liam Revell, Graham Slater, Josef Uyeda, Jason Weir and CRAN team (corrections in 2022)
Maintainer: Luke Harmon <lukeh at uidaho.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: geiger citation info
Materials: README ChangeLog
CRAN checks: geiger results

Documentation:

Reference manual: geiger.pdf

Downloads:

Package source: geiger_2.0.9.tar.gz
Windows binaries: r-devel: geiger_2.0.9.zip, r-release: geiger_2.0.9.zip, r-oldrel: geiger_2.0.9.zip
macOS binaries: r-release (arm64): geiger_2.0.9.tgz, r-oldrel (arm64): geiger_2.0.9.tgz, r-release (x86_64): geiger_2.0.9.tgz, r-oldrel (x86_64): geiger_2.0.9.tgz
Old sources: geiger archive

Reverse dependencies:

Reverse depends: convevol, iteRates, surface, TreeSim, windex
Reverse imports: evobiR, FishPhyloMaker, hilldiv, hillR, hisse, nichevol, nodeSub, pmc, Rarefy, ratematrix, secsse, sensiPhy, treedata.table, treeplyr
Reverse suggests: diversitree, fishtree, pcmabc, phytools, RNeXML

Linking:

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