geneExpressionFromGEO: Retrieves Gene Expression Dataset and Gene Symbols from GEO Code

A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optional) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

Version: 0.6
Depends: R (≥ 3.1.0)
Imports: xml2, Biobase, annotate, GEOquery
Suggests: knitr, rmarkdown
Published: 2021-04-24
Author: Davide Chicco ORCID iD [aut, cre]
Maintainer: Davide Chicco <davidechicco at davidechicco.it>
BugReports: https://stackoverflow.com/questions/tagged/geneExpressionFromGEO
License: GPL-3
URL: https://github.com/davidechicco/geneExpressionFromGEO
NeedsCompilation: no
CRAN checks: geneExpressionFromGEO results

Downloads:

Reference manual: geneExpressionFromGEO.pdf
Vignettes: geneExpressionFromGEOvignette
Package source: geneExpressionFromGEO_0.6.tar.gz
Windows binaries: r-devel: geneExpressionFromGEO_0.6.zip, r-release: geneExpressionFromGEO_0.6.zip, r-oldrel: geneExpressionFromGEO_0.6.zip
macOS binaries: r-release (arm64): not available, r-release (x86_64): geneExpressionFromGEO_0.6.tgz, r-oldrel: geneExpressionFromGEO_0.6.tgz
Old sources: geneExpressionFromGEO archive

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