geneExpressionFromGEO: Retrieves Gene Expression Dataset and Gene Symbols from GEO Code
A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optional) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
| Version: | 0.6 |
| Depends: | R (≥ 3.1.0) |
| Imports: | xml2, Biobase, annotate, GEOquery |
| Suggests: | knitr, rmarkdown |
| Published: | 2021-04-24 |
| Author: | Davide Chicco 
[aut, cre] |
| Maintainer: | Davide Chicco <davidechicco at davidechicco.it> |
| BugReports: | https://stackoverflow.com/questions/tagged/geneExpressionFromGEO |
| License: | GPL-3 |
| URL: | https://github.com/davidechicco/geneExpressionFromGEO |
| NeedsCompilation: | no |
| CRAN checks: | geneExpressionFromGEO results |
Downloads:
| Reference manual: | geneExpressionFromGEO.pdf |
| Vignettes: |
geneExpressionFromGEOvignette |
| Package source: | geneExpressionFromGEO_0.6.tar.gz |
| Windows binaries: | r-devel: geneExpressionFromGEO_0.6.zip, r-release: geneExpressionFromGEO_0.6.zip, r-oldrel: geneExpressionFromGEO_0.6.zip |
| macOS binaries: | r-release (arm64): not available, r-release (x86_64): geneExpressionFromGEO_0.6.tgz, r-oldrel: geneExpressionFromGEO_0.6.tgz |
| Old sources: | geneExpressionFromGEO archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=geneExpressionFromGEO to link to this page.