genio: Genetics Input/Output Functions

Implements readers and writers for file formats associated with genetics data. Reading and writing plink BED/BIM/FAM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles plink and eigenstrat tables (FAM, BIM, IND, and SNP files). There are also "make" functions for FAM and BIM tables with default values to go with simulated genotype data.

Version: 1.0.10
Imports: readr, tibble, Rcpp
LinkingTo: Rcpp
Suggests: testthat, knitr, rmarkdown, lfa, BEDMatrix, snpStats, pryr
Published: 2019-05-28
Author: Alejandro Ochoa ORCID iD [aut, cre]
Maintainer: Alejandro Ochoa <alejandro.ochoa at duke.edu>
BugReports: https://github.com/OchoaLab/genio/issues
License: GPL-3
URL: https://github.com/OchoaLab/genio
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: genio results

Downloads:

Reference manual: genio.pdf
Vignettes: Read and write BED files with genio
Package source: genio_1.0.10.tar.gz
Windows binaries: r-devel: genio_1.0.10.zip, r-release: genio_1.0.10.zip, r-oldrel: genio_1.0.10.zip
OS X binaries: r-release: genio_1.0.10.tgz, r-oldrel: genio_1.0.10.tgz
Old sources: genio archive

Linking:

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