ggmotif: Extract and Visualize Motif Information from MEME Software

Extract and visualize motif information from XML file from MEME software. In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread and usually assumed to be related to specifical biological functions. There exist many software was used to discover motif sequences from a set of nucleotide or amino acid sequences. MEME is almost the most used software to detect motif. It's difficult for biologists to extract and visualize the location of a motif on sequences from the results from MEME software.

Version:	0.1.1
Depends:	R (≥ 3.5.0)
Imports:	tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree, ape, aplot
Published:	2021-09-20
Author:	Xiang LI
Maintainer:	Xiang LI <lixiang117423 at foxmail.com>
License:	Artistic-2.0
NeedsCompilation:	no
CRAN checks:	ggmotif results

Documentation:

Reference manual:

ggmotif.pdf

Downloads:

Package source:	ggmotif_0.1.1.tar.gz
Windows binaries:	r-devel: ggmotif_0.1.1.zip, r-release: ggmotif_0.1.1.zip, r-oldrel: ggmotif_0.1.1.zip
macOS binaries:	r-release (arm64): ggmotif_0.1.1.tgz, r-oldrel (arm64): ggmotif_0.1.1.tgz, r-release (x86_64): ggmotif_0.1.1.tgz, r-oldrel (x86_64): ggmotif_0.1.1.tgz

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