ggmotif: Extract and Visualize Motif Information from MEME Software

Extract and visualize motif information from XML file from MEME software. In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread and usually assumed to be related to specifical biological functions. There exist many software was used to discover motif sequences from a set of nucleotide or amino acid sequences. MEME is almost the most used software to detect motif. It's difficult for biologists to extract and visualize the location of a motif on sequences from the results from MEME software.

Version: 0.1.1
Depends: R (≥ 3.5.0)
Imports: tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree, ape, aplot
Published: 2021-09-20
Author: Xiang LI
Maintainer: Xiang LI <lixiang117423 at>
License: Artistic-2.0
NeedsCompilation: no
CRAN checks: ggmotif results


Reference manual: ggmotif.pdf


Package source: ggmotif_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ggmotif_0.1.1.tgz, r-oldrel (arm64): ggmotif_0.1.1.tgz, r-release (x86_64): ggmotif_0.1.1.tgz, r-oldrel (x86_64): ggmotif_0.1.1.tgz


Please use the canonical form to link to this page.