A collection of cancer transcriptomics gene signatures as well as a
simple and tidy interface to compute single sample enrichment scores either
with the original procedure or with three alternatives:
the "combined z-score" of Lee et al. (2008) <doi:10.1371/journal.pcbi.1000217>,
the "single sample GSEA" of Barbie et al. (2009) <doi:10.1038/nature08460> and
the "singscore" of Foroutan et al. (2018) <doi:10.1186/s12859-018-2435-4>.
The 'get_sig_info()' function can be used to retrieve information about each
signature implemented.
| Version: |
0.1.2 |
| Depends: |
R (≥ 4.0) |
| Imports: |
dplyr (≥ 1.0.7), future.apply (≥ 1.8.1), rlang (≥ 0.4.11), stats (≥ 4.0.5), tibble (≥ 3.1.5), tidyr (≥ 1.1.4) |
| Suggests: |
covr, future (≥ 1.22.1), ggplot2 (≥ 3.3.5), knitr (≥
1.36), msigdbr (≥ 7.4.1), purrr (≥ 0.3.4), rmarkdown (≥
2.11) |
| Published: |
2022-02-17 |
| Author: |
Andrea Carenzo 
[aut, cre],
Loris De Cecco
[aut],
Federico Pistore [aut] |
| Maintainer: |
Andrea Carenzo <andrea.carenzo at gmail.com> |
| BugReports: |
https://github.com/Acare/hacksig/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/Acare/hacksig |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
hacksig results |