iTOP: Inferring the Topology of Omics Data

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).

Version: 1.0.1
Imports: Matrix, corpcor
Suggests: knitr, rmarkdown, NMF, pcalg, Rgraphviz
Published: 2018-04-04
Author: Nanne Aben
Maintainer: Nanne Aben <nanne.aben at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: iTOP results

Downloads:

Reference manual: iTOP.pdf
Vignettes: A quick introduction to iTOP
Package source: iTOP_1.0.1.tar.gz
Windows binaries: r-devel: iTOP_1.0.1.zip, r-release: iTOP_1.0.1.zip, r-oldrel: iTOP_1.0.1.zip
OS X binaries: r-release: iTOP_1.0.1.tgz, r-oldrel: iTOP_1.0.1.tgz
Old sources: iTOP archive

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