idiogramFISH: Idiograms with Marks and Karyotype Indices

Plot idiograms of several karyotypes having a set of dataframes for chromosome data and optionally mark data. Includes also a function to plot holocentrics and its marks supporting micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline or to the right of karyotypes. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> , karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Version: 1.8.3
Depends: R (≥ 3.0)
Imports: crayon, plyr
Suggests: ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra, prettydoc, rvcheck, rmarkdown, RCurl
Published: 2019-11-14
Author: Fernando Roa [aut, cre], Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao at unal.edu.co>
BugReports: https://gitlab.com/ferroao/idiogramFISH/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://ferroao.gitlab.io/manualidiogramfish/, https://ferroao.gitlab.io/idiogramFISH
NeedsCompilation: no
Citation: idiogramFISH citation info
Materials: README NEWS
CRAN checks: idiogramFISH results

Downloads:

Reference manual: idiogramFISH.pdf
Vignettes: 1. Plotting monocentric chromosomes
2. Plotting holocentric chromosomes
3. Groups of chromosomes
4. Plotting alongside phylogeny
5. Human karyotype
idiogramFISH: Installation and minimal examples
Package source: idiogramFISH_1.8.3.tar.gz
Windows binaries: r-devel: idiogramFISH_1.8.3.zip, r-devel-gcc8: idiogramFISH_1.8.3.zip, r-release: idiogramFISH_1.8.3.zip, r-oldrel: idiogramFISH_1.8.3.zip
OS X binaries: r-release: idiogramFISH_1.8.3.tgz, r-oldrel: idiogramFISH_1.8.3.tgz
Old sources: idiogramFISH archive

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