junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen (2018, <doi:10.1101/058107>) and Janzen (2020, <doi:10.1101/2020.09.10.292441>).

Version: 2.0.1
Depends: RcppParallel (≥ 5.0.0)
Imports: nloptr, Rcpp, tibble
LinkingTo: nloptr, Rcpp, RcppParallel
Suggests: dplyr, ggplot2, knitr, magrittr, rmarkdown, testthat, tidyr
Published: 2021-05-26
Author: Thijs Janzen [aut, cre]
Maintainer: Thijs Janzen <thijsjanzen at gmail.com>
BugReports: https://github.com/thijsjanzen/junctions/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https//github.com/thijsjanzen/junctions
NeedsCompilation: yes
SystemRequirements: C++14
Materials: README
CRAN checks: junctions results

Downloads:

Reference manual: junctions.pdf
Vignettes: Overview_of_the_junctions_package
junctions
phasing
Package source: junctions_2.0.1.tar.gz
Windows binaries: r-devel: junctions_2.0.1.zip, r-release: junctions_2.0.1.zip, r-oldrel: junctions_2.0.1.zip
macOS binaries: r-release (arm64): junctions_2.0.1.tgz, r-release (x86_64): junctions_2.0.1.tgz, r-oldrel: junctions_2.0.1.tgz
Old sources: junctions archive

Reverse dependencies:

Reverse suggests: GenomeAdmixR

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