knitr: A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

Version: 1.39
Depends: R (≥ 3.3.0)
Imports: evaluate (≥ 0.15), highr, methods, stringr (≥ 0.6), yaml (≥ 2.1.19), xfun (≥ 0.29), tools
Suggests: markdown, formatR, testit, digest, rgl (≥ 0.95.1201), codetools, rmarkdown, htmlwidgets (≥ 0.7), webshot, tikzDevice (≥ 0.10), tinytex, reticulate (≥ 1.4), JuliaCall (≥ 0.11.1), magick, png, jpeg, gifski, xml2 (≥ 1.2.0), httr, DBI (≥ 0.4-1), showtext, tibble, sass, bslib, ragg, styler (≥ 1.2.0), targets (≥ 0.6.0)
Published: 2022-04-26
Author: Yihui Xie ORCID iD [aut, cre], Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto ORCID iD [ctb], Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin ModrĂ¡k [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky ORCID iD [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar ORCID iD [ctb]
Maintainer: Yihui Xie <xie at yihui.name>
BugReports: https://github.com/yihui/knitr/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://yihui.org/knitr/
NeedsCompilation: no
SystemRequirements: Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).
Citation: knitr citation info
Materials: NEWS
In views: ReproducibleResearch
CRAN checks: knitr results

Documentation:

Reference manual: knitr.pdf
Vignettes: Custom Print Methods
Not an Introduction to knitr
knitr Reference Card
Display Tables with the JavaScript Library DataTables
Templating with knit_expand()
An R HTML Vignette with knitr
An R Markdown Vignette with knitr
R Markdown with the Docco Classic Style
R Markdown with the Docco Linear Style

Downloads:

Package source: knitr_1.39.tar.gz
Windows binaries: r-devel: knitr_1.39.zip, r-release: knitr_1.39.zip, r-oldrel: knitr_1.39.zip
macOS binaries: r-release (arm64): knitr_1.39.tgz, r-oldrel (arm64): knitr_1.39.tgz, r-release (x86_64): knitr_1.39.tgz, r-oldrel (x86_64): knitr_1.39.tgz
Old sources: knitr archive

Reverse dependencies:

Reverse depends: basecallQC, BoneProfileR, CNORode, DeMixT, docknitr, FAMetA, frequency, frequencyConnectedness, Guitar, LabRS, multiverse, NatureSounds, PopGenReport, qra, ReportingTools, reverseR, rmdHelpers, ROCpAI, rrecsys, sangeranalyseR, spThin, tab, tangram, tidycharts, tufterhandout
Reverse imports: abseqR, accessrmd, actel, ADAM, ADAMgui, adea, AdhereRViz, ADPclust, ahpsurvey, amanida, AMARETTO, amplican, Anaquin, animint2, APCtools, apsimx, archetyper, arsenal, assertive, AssetCorr, ASSISTant, attachment, autoharp, automagic, autoMrP, AutoScore, bandle, BatchQC, BayesianFROC, baytrends, BCHM, bcrm, bdchecks, bdclean, beam, behaviorchange, BENMMI, BGVAR, binb, BiocCheck, BiocStyle, BiocWorkflowTools, BioInsight, BioNetStat, blandr, BLCOP, blogdown, bookdown, bookdownplus, boot.heterogeneity, bpcs, BrailleR, brainKCCA, CALANGO, ccostr, CEMiTool, ceterisParibus, checkdown, cheese, chicane, chronicle, chunkhooks, cleaner, clinDataReview, clinUtils, ClustImpute, codebook, codified, cola, compareGroups, COMPASS, compcodeR, concurve, condformat, condir, confidence, conflr, corrgrapher, corto, cpsurvsim, crsra, cystiSim, dabr, dagirlite, DAPAR, data.validator, dataCompareR, dbglm, dccvalidator, DCEtool, DEGreport, DeltaMAN, dematel, dendroTools, DescrTab2, details, DiscoRhythm, distill, dlookr, dmdScheme, DmelSGI, DQAgui, DQAstats, drhur, DynareR, encryptr, ENMTools, envirem, epifitter, epitab, epitweetr, equatiomatic, ergm, erify, esATAC, estadistica, EviewsR, ezknitr, facerec, factorMerger, Fiscore, FishPhyloMaker, flair, flexdashboard, flextable, flipbookr, flowAI, flowBeads, flowPloidy, flying, FlyingR, forestRK, formattable, funGp, furniture, geckor, genogeographer, getable, ggPMX, gistr, gitdown, glossr, gm, Gmisc, grapesAgri1, Greg, gretlR, grwat, gSEM, gtsummary, GWASinspector, gWQS, HMP16SData, HMP2Data, hoardeR, hR, hrbrthemes, htmlTable, i2dash, iCellR, ideal, igate, iheatmapr, imgrec, inlmisc, INSPECTumours, IntramiRExploreR, intRinsic, IOHanalyzer, iotables, IRISFGM, ivdesc, jgcricolors, JSmediation, JuliaCall, kableExtra, kfa, kfigr, knitLatex, knitrBootstrap, knitrdata, learnr, lemon, lessR, levi, lfmm, liftr, lillies, LineagePulse, lingglosses, linguisticsdown, linl, lintr, lipidomeR, lrd, LTASR, MACPET, manipulateWidget, marked, MBNMAtime, mdapack, memor, MendelianRandomization, meshr, MetaIntegration, MetaLandSim, metapower, metathis, mgwrsar, microbiomeExplorer, microsamplingDesign, midasHLA, mindr, minidown, mitch, MobileTrigger, moderndive, modest, mosaicModel, MQmetrics, multisensi, MVNtestchar, MXM, NACHO, NanoStringQCPro, nanotatoR, ncappc, netSEM, nlmixr2est, nlraa, officedown, OmicInt, omicplotR, opencpu, OpenStats, oppti, Orcs, ORION, orloca, oRus, osmose, ottrpal, PAFit, PALMO, PAMpal, panelvar, papaja, pathfindR, PathoStat, patientProfilesVis, pbkrtest, pcaExplorer, PFIM, phase1PRMD, PhenStat, PheVis, pinp, PINstimation, pipeComp, pixiedust, pkgnet, Platypus, plumbertableau, pmxpartab, pointblank, polmineR, polymapR, polyqtlR, POMA, PoPdesign, preferably, PreKnitPostHTMLRender, prettyglm, printr, pRoloc, protGear, PTXQC, pysd2r, qbld, qcmetrics, qmethod, qPLEXdata, qpNCA, qte, quokar, qwraps2, rADA, radiant.data, RagGrid, rAmCharts, rapbase, rasciidoc, rcarbon, RCAS, rchallenge, RCPA3, Rd2md, rebook, regioncode, regionReport, regmed, remedy, REPLesentR, reportfactory, reprex, Revticulate, rgl, rim, RITAN, rjdmarkdown, rje, rleafmap, RLumShiny, rmarkdown, rmdformats, rmdpartials, rmdwc, rmsb, rnmamod, ROC, roxygen2, Rqc, rsf, rsimsum, RTCGA, rtemps, rTG, rticles, SASmarkdown, SBGNview, SBGNview.data, scan, scmeth, scoringRules, SCRIP, scTensor, scTGIF, sdcMicro, sdcTable, SEIRfansy, seminr, SemNetDictionaries, shinyalert, shinydrive, shinyobjects, shinyr, sjPlot, sketchy, skimr, sknifedatar, smartDesign, spathial, spelling, spsur, stabiliser, starticles, statgenGxE, statgenSTA, stationery, Statsomat, statsr, statVisual, strm, struct, survMisc, svSweave, SynDI, table1, tablerDash, tables, targets, TCGAbiolinks, teachingApps, testcorr, TestGardener, texPreview, text2speech, TGST, thurstonianIRT, tidydatatutor, tidypredict, tint, TnT, tpfp, TPP, traineR, trelliscopejs, tscR, ttt, tufte, tutorial, twoxtwo, ubiquity, ufs, umx, UPG, upstartr, vcpen, VDSM, vegtable, VicmapR, vidger, visxhclust, vitae, vote, vtable, warbleR, webexercises, workflowr, wrappedtools, wrProteo, xaringan, xaringanExtra
Reverse suggests: a4Classif, a4Core, a4Preproc, a4Reporting, ABACUS, abbyyR, ABC.RAP, abess, ABHgenotypeR, abn, abstr, abstractr, academictwitteR, accelerometry, accessibility, accrualPlot, ACDC, ACE, ace2fastq, acnr, act, ActFrag, activatr, ActiveDriverWGS, ActivePathways, activityCounts, ActivityIndex, actuaryr, adaptDiag, AdaptGauss, adaptiveGPCA, adaptMT, adaptr, AdaSampling, adass, add2ggplot, addinsOutline, additive, additivityTests, addScales, adductData, adductomicsR, adegraphics, adepro, adept, adespatial, adfExplorer, AdhereR, ADImpute, adjclust, admiral, admix, admixr, admmDensestSubmatrix, ADMMsigma, ADMUR, adnuts, adobeanalyticsr, adoptr, adpss, AdvancedBasketballStats, adventr, AeRobiology, afdx, afex, affinity, AffiXcan, affycoretools, afpt, AFR, ag5Tools, aggregateBioVar, AGHmatrix, aglm, agricolaeplotr, agridat, agriwater, AgroR, agua, AHEnsDbs, AHLRBaseDbs, AHM, AHMeSHDbs, ahMLE, ahnr, AHPathbankDbs, ahptopsis2n, AHPubMedDbs, AHWikipathwaysDbs, AIPW, aire.zmvm, airGR, airGRdatassim, airGRiwrm, airGRteaching, AirMonitor, airpart, airportr, airqualityES, airr, airt, airway, ajv, akc, akmedoids, alakazam, ALDEx2, aldvmm, alevinQC, alfr, alfred, algo, algorithmia, allcontributors, alleHap, AllelicImbalance, allestimates, Allspice, alluvial, almanac, alookr, alpaca, AlphaBeta, alphabetr, AlphaPart, AlphaSimR, alphavantager, alpine, alpineData, AlpsNMR, altair, ALUES, amanpg, amapGeocode, AMAPVox, AMARETTO, AMCTestmakeR, Amelia, amelie, amen, amerifluxr, AMModels, AMOUNTAIN, amp, ampir, AMPLE, AMR, amt, AnaCoDa, analogsea, analysisPipelines, analyzer, AncestryMapper, AnchorRegression, ANCOMBC, Andromeda, andurinha, AneuFinder, ANF, AnglerCreelSurveySimulation, anim.plots, animalcules, animl, anipaths, anndata, AnnoProbe, annotater, AnnotationBustR, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotatr, ANOM, anomalize, anota2seq, ANOVAreplication, anovir, anscombiser, antaresEditObject, antaresProcessing, antaresRead, antaresViz, AnthropMMD, Anthropometry, anticlust, antitrust, ANTs, AnVIL, AnVILBilling, AnVILPublish, anyLib, ao, aoos, AOV1R, apa, apache.sedona, APAlyzer, apaTables, APAtree, apcf, apcluster, apeglm, apex, apexcharter, aphid, aphylo, APIS, APL, aplore3, apollo, applicable, apyramid, AquaBPsim, AQuadtree, ArchaeoChron, ArchaeoPhases, archeofrag, archetypal, archivist, archivist.github, arcpullr, arctools, areal, arena2r, arenar, argoFloats, argonR, argparse, ari, ARIbrain, arkdb, arkhe, armspp, ARPobservation, arrangements, arrayQualityMetrics, arrow, artMS, ARTofR, ARTool, aRxiv, ASAFE, ascii, asciicast, asciiSetupReader, ascotraceR, AshkenazimSonChr21, ashr, ASICS, ASICSdata, ASMap, ASpediaFI, aspi, aspline, aSPU, assemblerr, assertable, assertr, AssessORF, AssessORFData, ASSET, AssetAllocation, ASSIGN, assignPOP, assignR, ast2ast, asteRisk, ASURAT, asymmetry, asymptor, async, atable, ATACseqQC, ATbounds, atena, ATNr, atsd, atSNP, attempt, attention, attrib, AUCell, auctestr, auctionr, audiometry, auditor, augmentedRCBD, AugmenterR, auk, aum, ausplotsR, AustralianPoliticians, AUtests, auth0, auto.pca, autocart, AutoDeskR, autoFC, autoimage, autonomics, autoplotly, autoRasch, autoReg, autostats, autostsm, autothresholdr, autoTS, avar, AvInertia, aVirtualTwins, avocado, aweek, aweSOM, AWFisher, aws.alexa, aws.ecx, awst, AzureAuth, AzureCognitive, AzureContainers, AzureCosmosR, AzureGraph, AzureKeyVault, AzureKusto, azuremlsdk, AzureQstor, AzureRMR, AzureStor, AzureTableStor, AzureVision, AzureVM, BaalChIP, babelgene, babette, babsim.hospital, BacArena, backbone, backpipe, backShift, bacon, bacondecomp, baggr, bain, Ball, ballgown, BALLI, bama, bambu, bamlss, bamp, bamsignals, BANDITS, bang, bannerCommenter, banocc, BANOVA, baRcodeR, barcodetrackR, BARIS, barplot3d, BART, baRulho, BAS, base.rms, base64url, baseballDBR, baseballr, basedosdados, BaseSet, BASiCS, BasicSTARRseq, basictabler, basilisk, basilisk.utils, BASiNET, BASiNETEntropy, basket, BASS, batata, batchelor, BatchGetSymbols, batchmix, batchtma, batchtools, bate, BAwiR, bayes4psy, bayesAB, bayesanova, bayesassurance, bayesbr, BayesCombo, bayesCT, bayesdfa, bayesDP, BayesESS, BayesFactor, bayesforecast, BayesGOF, bayesian, BayesianNetwork, BayesianPower, BayesianReasoning, BayesianTools, bayesImageS, bayeslm, BayesLN, bayesm, BayesMallows, BayesMassBal, bayesmeta, bayesmove, BayesMRA, bayesnec, bayesplay, bayesplot, bayesPO, BayesPostEst, Bayesrel, bayesrules, BayesSampling, BayesSpace, BayesSurvival, bayestestR, BayesTools, BayesVarSel, bayfoxr, baymedr, bayNorm, bazar, bbknnR, bbmle, bbotk, bbreg, bbricks, bbw, bcaboot, BCDAG, bcdata, BCEA, Bchron, BClustLonG, bcmaps, bcpa, bcROCsurface, bcSeq, BCSub, bcTSNE, bdc, BDgraph, bdl, bdlp, BDMMAcorrect, bdots, BDP2, bdpar, bdrc, bdscale, beachmat, beadarray, BeadDataPackR, beadplexr, BeadSorted.Saliva.EPIC, beakr, beanz, BEARscc, beastier, beautier, BEclear, BED, bedr, beer, beezdemand, behavr, belg, benchdamic, benchmarkfdrData2019, benchmarkme, benthos, berryFunctions, bestNormalize, BESTree, bestridge, BetaPASS, BETS, BeviMed, BFpack, bfw, BgeeCall, BgeeDB, BGGM, bggum, bhmbasket, BHMSMAfMRI, BHSBVAR, BHTSpack, bib2df, bibliometrix, biblionetwork, BiCausality, biClassify, biclustermd, BICORN, BiDimRegression, BIEN, bife, BiFET, bifurcatingr, BIGDAWG, bigDM, BIGL, biglasso, bigleaf, bigMap, bignum, bigPint, bigQF, bigQueryR, bigstep, BigVAR, billboarder, BinarybalancedCut, BinaryDosage, BindingSiteFinder, binman, BinMat, binomialRF, binovisualfields, BinSegBstrap, binsegRcpp, BINtools, bio3d, bioacoustics, bioassayR, bioassays, biobroom, biobtreeR, bioC.logs, bioCancer, BiocDockerManager, BiocFileCache, BiocIO, BioCircos, BiocManager, BiocNeighbors, biocompute, BiocOncoTK, BioCor, BiocParallel, BiocPkgTools, BiocSet, BiocSingular, BiocSklearn, biocthis, biocViews, biodb, biodbChebi, biodbExpasy, biodbHmdb, biodbKegg, biodbLipidmaps, biodbMirbase, biodbNcbi, biodbNci, biodbUniprot, biodosetools, biogas, biogram, biogrowth, Bioi, BioImageDbs, bioimagetools, bioinactivation, biokNN, biomaRt, biomartr, BIOMASS, biomformat, BioMM, BioNERO, bioOED, Biopeak, BioPlex, BioQC, bioRad, BioRssay, biosensors.usc, bioseq, biosigner, Biostatistics, biosurvey, biotic, BioTIP, biotmle, biotools, BioVenn, bipartite, bipartiteD3, bipd, BiplotML, biscale, biscuiteer, biscuiteerData, BisqueRNA, bistablehistory, bit, bitmexr, BivRec, biwavelet, bizdays, bkmrhat, blacksheepr, blaise, BlandAltmanLeh, blapsr, blastula, blima, blink, bliss, BlockCov, blockCV, blocklength, BloodCancerMultiOmics2017, BloodGen3Module, blorr, BLPestimatoR, bluebike, bluster, bmass, bmggum, bmlm, bmotif, BMRBr, bmrm, BMRSr, bmscstan, bmstdr, bnbc, bnclassify, bndovb, bnem, bnma, bnmonitor, BNPdensity, bnpsd, BNrich, bnspatial, bnstruct, BOBaFIT, bodenmiller, bodymapRat, BOJ, BoltzMM, bonsai, bootf2, bootGOF, bootPLS, bootUR, borealis, borrowr, BOSO, BoSSA, BOSSreg, boundingbox, BoutrosLab.plotting.general, box, boxr, bp, bpa, bpbounds, bpnreg, bpp, BPRMeth, bRacatus, brainflowprobes, BrainSABER, BranchGLM, branchpointer, BRDT, breakaway, breakDown, breakfast, breakpointR, breakpointRdata, breathtestcore, breathteststan, brendaDb, BRETIGEA, brgedata, BRGenomics, brglm2, BridgeDbR, bridgedist, bridgesampling, brinton, briskaR, brm, brms, brmsmargins, brokenstick, brolgar, broom, broom.helpers, broom.mixed, brotli, BrowserViz, bs4cards, bs4Dash, BSBT, bSims, bslib, bsplus, bsseq, bssm, bst, bsub, BSW, BTYD, BTYDplus, BubbleTree, bubblyr, buffeRs, bugsigdbr, buildmer, buildr, bulkAnalyseR, bulletcp, bumbl, bumblebee, BUMHMM, BumpyMatrix, bunching, bunchr, burnr, BUScorrect, busdater, BUSpaRse, BUSseq, butcher, bvartools, bwsTools, bytescircle, c2c, c3, C50, CACIMAR, CAEN, caesar, CAGEfightR, cageminer, CAGEr, CAISEr, calculus, calendar, calm, calpassapi, campfin, campsis, campsismod, camsRad, caMST, camtrapR, canadamaps, cancensus, canceR, CancerInSilico, CancerSubtypes, candisc, Canek, canprot, cansim, canvasXpress, cape, capitalR, capl, captioner, captr, car, caracas, caRamel, carbonate, card, Cardinal, CardinalWorkflows, caRecall, careless, caret, caretEnsemble, caretForecast, CARlasso, CARNIVAL, caROC, carpenter, caRpools, cartograflow, cartography, casabourse, Cascade, cascsim, casebase, casen, casino, CASMAP, cassandRa, CAST, cat.dt, cat2cat, catalog, CATALYST, CatastRo, cate, categoryCompare, catenary, cati, catmap, catmaply, cats, catsim, cattonum, causact, causaldrf, CausalGPS, CausalImpact, CausalMBSTS, causaloptim, causalOT, CausalQueries, CausalR, causalsens, causalweight, CB2, cbaf, CBDA, CBEA, cBioPortalData, cbpManager, cbsodataR, CCAMLRGIS, ccaPP, ccfindR, ccmap, ccmEstimator, ccoptimalmatch, ccpsyc, ccRemover, ccrepe, cdata, CDatanet, cder, cdfquantreg, cdparcoord, celaref, celarefData, celda, CellaRepertorium, CellBarcode, cellbaseR, CellBench, celldex, CelliD, cellity, cellmigRation, CellMixS, CellNOptR, cellpypes, cellranger, cellscape, CellScore, celltrackR, CellTrails, cellTree, cellWise, cellxgenedp, CENFA, censcyt, censo2017, Census2016, censusapi, censusr, censusxy, CEOdata, Cepo, ceRNAnetsim, ceRtainty, Certara.R, ceser, cesR, cetcolor, CeTF, CexoR, CFAcoop, cfda, cfDNAPro, cffr, CGGP, cgmquantify, CGNM, CGPfunctions, ChainLadder, chameleon, ChAMP, chandwich, changepoints, ChangePointTaylor, chantrics, charlatan, checkmate, checkpoint, checkr, cheem, chemCal, ChemmineDrugs, ChemmineOB, ChemmineR, chemmodlab, chemodiv, ChemoSpec, ChemoSpec2D, chess, chessR, chest, Chicago, childesr, chilemapas, chillR, chimeraviz, ChIPanalyser, chipenrich, chipenrich.data, ChIPexoQual, ChIPexoQualExample, chipPCR, ChIPpeakAnno, ChIPseeker, chipseqDBData, chirps, chisq.posthoc.test, chk, chkptstanr, chlorpromazineR, CHNOSZ, CHOIRBM, cholera, CholWishart, chromatographR, chromhmmData, chromoMap, ChromSCape, chromstaR, chromswitch, chromVAR, chronicler, chronochrt, CHRONOS, chronosphere, chyper, CIARA, ciccr, cicero, CIDER, CIEE, cifti, ciftiTools, CIMICE, cimir, cinaR, CINdex, CINmetrics, CINNA, cinterpolate, CIPerm, cir, circacompare, circle, circlize, circRNAprofiler, circularEV, CircularSilhouette, circumplex, cIRT, citationchaser, CiteFuse, ciTools, ciuupi2, civis, CJAMP, cjbart, Ckmeans.1d.dp, CKMRpop, clam, clarifai, ClassifyR, classInt, classmap, cleangeo, cleanNLP, cleanUpdTSeq, cleaver, clere, clhs, cli, ClickHouseHTTP, clifford, clifro, climaemet, climate, climateStability, climatrends, ClimMobTools, ClimProjDiags, climwin, clinicalsignificance, clinmon, clinspacy, clintools, clipr, cliProfiler, cliqueMS, CliquePercolation, CLLmethylation, clock, clonotypeR, cloudml, cloudos, clubSandwich, CluMP, CluMSID, ClussCluster, clustAnalytics, ClustAssess, clustcurv, Cluster.OBeu, clusteredinterference, clusterExperiment, clusterhap, ClusterJudge, clustermole, clustermq, clusternomics, clusterPower, clusterProfiler, ClusterR, ClusterSignificance, ClustGeo, clustifyr, clustifyrdatahub, ClusTorus, clustra, clustree, ClustVarLV, clustvarsel, CLVTools, cmapR, cmcR, cmdfun, cmfrec, cmhc, cmocean, cmprskcoxmsm, cmpsR, cmR, cms, cmstatr, cmtest, cmvnorm, CNAIM, cnbdistr, CNEr, cNORM, CNVfilteR, CNVgears, CNViz, CNVMetrics, CNVPanelizer, CNVRanger, CNVrd2, CNVScope, coala, coarseDataTools, cobalt, coca, COCOA, cocorresp, coda.base, coda4microbiome, codacore, codalm, CodeDepends, codelink, codemeta, codemetar, coder, CoDiNA, codingMatrices, codyn, coefplot, coenocliner, cofad, coffee, CoFRA, CoGAPS, cogena, cogeqc, Cogito, cognitoR, cohortBuilder, CohortPlat, cohorttools, coil, coinmarketcapr, Coinprofile, COINr, cointmonitoR, cointReg, colf, collapse, CollapseLevels, collateral, collin, coloc, colocr, colorblindcheck, colorBlindness, colorDF, colordistance, colorednoise, colorhcplot, colorist, colorpatch, colorspace, colorSpec, colourpicker, colourvision, colt, comapr, comat, combi, combinedevents, combiroc, coMET, coMethDMR, COMIX, CommonJavaJars, commonsMath, communication, comorbidity, Compack, comparer, compartmap, compEpiTools, comperank, comperes, compicc, completejourney, ComplexHeatmap, complexity, complexNet, ComplexUpset, compositions, composits, CompoundDb, ComPrAn, comprehenr, comsimitv, comtradr, concatipede, conclus, concstats, CondCopulas, condGEE, condiments, CondiS, condTruncMVN, condusco, condvis2, conf, CONFESS, config, configr, confintr, conformalbayes, ConformalSmallest, confoundr, confSAM, ConfusionTableR, CongreveLamsdell2016, CoNI, conjurer, conleyreg, connectwidgets, conos, conquestr, consensus, consensusDE, consensusOV, consensusSeekeR, consort, ConsReg, CONSTANd, constellation, conStruct, contact, contactdata, container, contentid, conText, contingency, ContourFunctions, contrast, contribution, contTimeCausal, conumee, convdistr, convergEU, convexjlr, convey, CoopGame, CoordinateCleaner, CopernicusDEM, copula, CopulaDTA, CopyNeutralIMA, CopyNumberPlots, copyseparator, coRanking, corazon, Corbi, coRdon, coreCT, CoRegNet, CoreGx, corHMM, CorMID, corncob, 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RGF, Rgff, rGhanaCensus, Rgin, rgl2gltf, rglobi, RGMQL, RGMQLlib, rgoogleads, rgoogleslides, rgoslin, rgplates, rgraph6, rGREAT, RGremlinsConjoint, RGSEA, rgsepd, rgtmx, rgugik, rhandsontable, rhdf5, rhdf5client, rhdf5filters, Rhdf5lib, rhierbaps, rhino, Rhisat2, rhoR, rhosa, RHPCBenchmark, RHRT, RHRV, Rhtslib, rhub, RHybridFinder, rhymer, ri2, RIA, RiboCrypt, RiboDiPA, RiboProfiling, ribor, ribosomeProfilingQC, rich, ricu, RIdeogram, riem, Riemann, Riex, rifi, rigr, Rilostat, RImmPort, rinat, ring, RInno, rio, RIPAT, ripserr, riskclustr, riskCommunicator, riskmetric, riskParityPortfolio, riskyr, RIVER, riverconn, riverdist, riverplot, rivr, rjade, RJcluster, RJDemetra, RJMCMCNucleosomes, rjqpd, rjwsacruncher, RKelly, rkeops, rKolada, rLakeAnalyzer, rlang, RLassoCox, rlcv, Rlda, rless, rLFT, Rlgt, RLHub, rliger, RLSeq, rly, rmangal, rmapshaper, rmapzen, rmarchingcubes, RmarineHeatWaves, RMassBank, RMBC, rmcorr, rmdcev, rmdfiltr, rmdplugr, rmdshower, rmelting, rmetalog, rMIDAS, rminizinc, RMixtComp, RMLPCA, Rmmquant, rmonad, rms, rmsfuns, rmspc, rmt, RMTL, rMVP, rmytarget, RNAAgeCalc, RNAdecay, rnaEditr, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.Data, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAsense, rnaseqcomp, RNAseqNet, RNAseqQC, RnaSeqSampleSize, RnaSeqSampleSizeData, rnassqs, rnaturalearth, rnaturalearthdata, rnbp, rNeighborGWAS, rNeighborQTL, rnetcarto, RNewsflow, RNeXML, RNGforGPD, RNHANES, Rnits, Rnmr1D, rnn, rnpn, rnrfa, roadoi, roads, roahd, robber, robCompositions, robin, robis, RoBMA, robmed, robnptests, robotstxt, RoBSA, robsel, robservable, robsurvey, robust2sls, robustlm, robvis, ROCaggregator, ROCFTP.MMS, ROCit, rock, rocker, rockr, rococo, ROCpAI, ROCR, Rodam, rODE, rodeo, rofanova, Rogue, roistats, RolDE, rolldown, rollRegres, rolog, rolr, rols, romic, roots, rope, ROpenCVLite, roperators, ropercenter, ropls, rorcid, ROSeq, rosetteApi, rotations, rotl, round, Routliers, roxytest, RPA, rPACI, rpact, Rpadrino, rpatrec, RPEXE.RPEXT, rpf, rphylopic, rpivotTable, rplos, rpmodel, Rpoet, Rpolyhedra, RPostgres, RPPASPACE, rpredictit, rPref, rprev, rprime, rprimer, rprintf, RprobitB, rprojroot, rprojtree, RProtoBufLib, rpsftm, rptR, Rpvt, rpx, RPyGeo, rqdatatable, RQEntangle, rqt, rquery, Rraven, rrefine, rrMixture, RRMLRfMC, rroad, RRphylo, RRPP, rrr, RRreg, RRRR, rrscale, rrtable, RRTCS, rrvgo, rsae, rSAFE, RSAGA, rsample, Rsampling, rsat, rscala, rscc, RScelestial, rsconnect, rscopus, rscorecard, rScudo, RSDA, rsdmx, rSEA, RSelenium, rsemmed, RSentiment, RSeqAn, rsetse, rsinaica, rslurm, rsnps, rsolr, Rspc, RSpectra, rsppfp, RSQL, RSQLite, rsqliteadmin, RSqlParser, RsqMed, rstan, rstanarm, rstanemax, rstantools, rstatix, rstiefel, rstoat, rstudioapi, rsvddpd, rsvg, rSWeeP, rsyncrosim, rt, rtables, RTCC, RTCGA.clinical, RTCGA.CNV, RTCGA.methylation, RTCGA.miRNASeq, RTCGA.mRNA, RTCGA.mutations, RTCGA.PANCAN12, RTCGA.rnaseq, RTCGA.RPPA, RTCGAToolbox, rTCRBCRr, RtD3, rtdists, rtext, rticulate, rtiddlywiki, rties, RTIGER, rTLS, rtmpt, 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Reverse enhances: collapsibleTree, htmltools, kimisc, networkD3, patchSynctex, svgPanZoom, threejs

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