metaCluster: Metagenomic Clustering

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

Version: 0.1.0
Depends: R (≥ 3.6)
Imports: factoextra, cluster, dbscan, dplyr, seqinr, Biostrings
Published: 2021-09-30
Author: Dipro Sinha [aut, cre], Sayanti Guha Majumdar [aut], Anu Sharma [aut], Dwijesh Chandra Mishra [aut]
Maintainer: Dipro Sinha <diprosinha at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: metaCluster results

Documentation:

Reference manual: metaCluster.pdf

Downloads:

Package source: metaCluster_0.1.0.tar.gz
Windows binaries: r-devel: metaCluster_0.1.0.zip, r-release: metaCluster_0.1.0.zip, r-oldrel: metaCluster_0.1.0.zip
macOS binaries: r-release (arm64): metaCluster_0.1.0.tgz, r-release (x86_64): metaCluster_0.1.0.tgz, r-oldrel: metaCluster_0.1.0.tgz

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