metan: Multi Environment Trials Analysis

Performs stability analysis of multi-environment trial data using parametric and non-parametric methods. Parametric methods includes Additive Main Effects and Multiplicative Interaction (AMMI) analysis by Gauch (2013) <doi:10.2135/cropsci2013.04.0241>, Genotype plus Genotype-Environment (GGE) biplot analysis by Yan & Kang (2003) <doi:10.1201/9781420040371>, joint Regression Analysis by Eberhart & Russel (1966) (<doi:10.2135/cropsci1966.0011183X000600010011x>), ecovalence by Wricke (1965), genotypic confidence index by Annicchiarico (1992), Murakami & Cruz's (2004) method <doi:10.12702/1984-7033.v04n01a02>, stability variance by Shukla (1972) <doi:10.1038/hdy.1972.87>, weighted average of absolute scores by Olivoto et al. (2019a) <doi:10.2134/agronj2019.03.0220>, and multi-trait stability index by Olivoto et al. (2019b) <doi:10.2134/agronj2019.03.0221>. Non-parametric methods includes superiority index by Lin & Binns (1988) <doi:10.4141/cjps88-018>, nonparametric measures of phenotypic stability by Huehn (1990) <https://link.springer.com/article/10.1007/BF00024241>, TOP third statistic by Fox et al. (1990) <doi:10.1007/BF00040364>, geometric adaptability index described by Shahbazi (2019) <doi:10.1016/j.scienta.2019.04.047>. Functions for computing biometrical analysis such as path analysis, canonical correlation, partial correlation, clustering analysis, and tools for inspecting, manipulating, summarizing and plotting typical multi-environment trial data are also provided.

Version: 1.3.0
Depends: R (≥ 3.5.0)
Imports: ade4, dendextend, cowplot, dplyr, FWDselect, GGally, ggforce, ggplot2, ggrepel, grid, lattice, lme4, lmerTest, magrittr, methods, progress, purrr, rlang, tibble, tidyr, tidyselect (≥ 1.0.0)
Suggests: DT, knitr, readxl, rmarkdown, roxygen2
Published: 2020-02-11
Author: Tiago Olivoto ORCID iD [aut, cre, cph]
Maintainer: Tiago Olivoto <tiagoolivoto at gmail.com>
BugReports: https://github.com/TiagoOlivoto/metan/issues
License: GPL-3
URL: https://github.com/TiagoOlivoto/metan
NeedsCompilation: no
Language: en-US
Citation: metan citation info
Materials: NEWS
CRAN checks: metan results

Downloads:

Reference manual: metan.pdf
Vignettes: Multi-environment Trial Analysis
Package source: metan_1.3.0.tar.gz
Windows binaries: r-devel: metan_1.3.0.zip, r-devel-gcc8: metan_1.3.0.zip, r-release: metan_1.3.0.zip, r-oldrel: metan_1.3.0.zip
OS X binaries: r-release: metan_1.3.0.tgz, r-oldrel: metan_1.3.0.tgz
Old sources: metan archive

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